Index

A

add_or_update_time_dim() (in module CrocoDash.rm6.regional_mom6.regridding) add_secondary_dimension() (in module CrocoDash.rm6.regional_mom6.regridding)

angle_between() (in module CrocoDash.rm6.regional_mom6.utils) ap2ep() (in module CrocoDash.rm6.regional_mom6.utils)

B

bathymetry (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property) bathymetry_path (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property)

bgc_in_compset (CrocoDash.case.Case property) boundary_fill_method (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute)

C

capture_fill_metadata() (in module CrocoDash.extract_forcings.code.regrid_dataset_piecewise) Case (class in CrocoDash.case) change_MOM_parameter() (in module CrocoDash.rm6.regional_mom6.MOM_parameter_tools) check_date_continuity() (in module CrocoDash.extract_forcings.utils) cice_in_compset (CrocoDash.case.Case property) Config (class in CrocoDash.rm6.regional_mom6.config) configure_bgc_ic() (CrocoDash.case.Case method) configure_bgc_iron_forcing() (CrocoDash.case.Case method) configure_chl() (CrocoDash.case.Case method) configure_cpu_layout() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) configure_forcings() (CrocoDash.case.Case method) configure_initial_and_boundary_conditions() (CrocoDash.case.Case method) configure_river_nutrients() (CrocoDash.case.Case method) configure_tides() (CrocoDash.case.Case method) convert_lons_to_180_range() (in module CrocoDash.raw_data_access.datasets.utils) convert_string_to_value() (in module CrocoDash.rm6.regional_mom6.config) convert_value_to_string() (in module CrocoDash.rm6.regional_mom6.config) coords() (in module CrocoDash.rm6.regional_mom6.regridding) create_empty() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment class method) create_expanded_hgrid() (in module CrocoDash.rm6.regional_mom6.rotation) create_expt() (in module CrocoDash.rm6.tests.test_config_class) create_regridder() (in module CrocoDash.rm6.regional_mom6.regridding) CrocoDash module CrocoDash.case module CrocoDash.extract_forcings module CrocoDash.extract_forcings.code module CrocoDash.extract_forcings.code.get_dataset_piecewise module CrocoDash.extract_forcings.code.merge_piecewise_dataset module CrocoDash.extract_forcings.code.regrid_dataset_piecewise module CrocoDash.extract_forcings.driver module CrocoDash.extract_forcings.utils module CrocoDash.grid module CrocoDash.raw_data_access module CrocoDash.raw_data_access.datasets module CrocoDash.raw_data_access.datasets.glorys module CrocoDash.raw_data_access.datasets.seawifs module

CrocoDash.raw_data_access.datasets.utils module CrocoDash.raw_data_access.utils module CrocoDash.rm6 module CrocoDash.rm6.regional_mom6 module CrocoDash.rm6.regional_mom6.config module CrocoDash.rm6.regional_mom6.MOM_parameter_tools module CrocoDash.rm6.regional_mom6.regional_mom6 module CrocoDash.rm6.regional_mom6.regridding module CrocoDash.rm6.regional_mom6.rotation module CrocoDash.rm6.regional_mom6.utils module CrocoDash.rm6.tests module CrocoDash.rm6.tests.conftest module CrocoDash.rm6.tests.test_config_class module CrocoDash.rm6.tests.test_expt_class module CrocoDash.rm6.tests.test_grid_generation module CrocoDash.rm6.tests.test_parameter module CrocoDash.rm6.tests.test_regridding module CrocoDash.rm6.tests.test_rotation module CrocoDash.rm6.tests.test_tides module CrocoDash.rm6.tests.test_utils module CrocoDash.topo module CrocoDash.topo_editor module CrocoDash.utils module CrocoDash.vgrid module

D

depth_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) description (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS attribute)

dummy_bathymetry_data() (in module CrocoDash.rm6.tests.conftest) dummy_tidal_data() (in module CrocoDash.rm6.tests.test_tides)

E

encode_tidal_files_and_output() (CrocoDash.rm6.regional_mom6.regional_mom6.segment method) ep2ap() (in module CrocoDash.rm6.regional_mom6.utils) era5_paths (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property) eta_var_name (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute)

EXPAND_GRID (CrocoDash.rm6.regional_mom6.rotation.RotationMethod attribute), [1] experiment (class in CrocoDash.rm6.regional_mom6.regional_mom6) export_dataset() (in module CrocoDash.utils) expt (CrocoDash.case.Case property)

F

fill_missing_data() (in module CrocoDash.rm6.regional_mom6.regridding) fill_template() (in module CrocoDash.raw_data_access.utils) final_cleanliness_fill() (in module CrocoDash.extract_forcings.code.regrid_dataset_piecewise)

find_files_by_pattern() (in module CrocoDash.rm6.regional_mom6.utils) find_MOM6_rectangular_orientation() (CrocoDash.case.Case method) (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method)

G

generate_dz() (in module CrocoDash.rm6.regional_mom6.regridding) generate_encoding() (in module CrocoDash.rm6.regional_mom6.regridding) generate_layer_thickness() (in module CrocoDash.rm6.regional_mom6.regridding) generate_rectangular_hgrid() (in module CrocoDash.rm6.regional_mom6.regional_mom6) generate_rof_ocn_map() (CrocoDash.case.Case method) generate_silly_coords() (in module CrocoDash.rm6.tests.conftest) generate_silly_ic_dataset() (in module CrocoDash.rm6.tests.conftest) generate_silly_vt_dataset() (in module CrocoDash.rm6.tests.conftest) generate_temperature_arrays() (in module CrocoDash.rm6.tests.conftest) get_boundary_mask() (in module CrocoDash.rm6.regional_mom6.regridding) get_curvilinear_hgrid() (in module CrocoDash.rm6.tests.conftest) get_dataset_piecewise() (in module CrocoDash.extract_forcings.code.get_dataset_piecewise) get_edge() (in module CrocoDash.rm6.regional_mom6.utils)

get_global_seawifs_script_for_cli() (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS static method) get_glorys() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) get_glorys_data() (in module CrocoDash.rm6.regional_mom6.regional_mom6) get_glorys_data_from_cds_api() (CrocoDash.raw_data_access.datasets.glorys.GLORYS static method) get_glorys_data_from_rda() (CrocoDash.raw_data_access.datasets.glorys.GLORYS static method) get_glorys_data_script_for_cli() (CrocoDash.raw_data_access.datasets.glorys.GLORYS static method) get_hgrid_arakawa_c_points() (in module CrocoDash.rm6.regional_mom6.regridding) get_processed_global_seawifs_script_for_cli() (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS static method) get_rectilinear_hgrid() (in module CrocoDash.rm6.tests.conftest) get_rotation_angle() (in module CrocoDash.rm6.regional_mom6.rotation) get_temperature_dataarrays() (in module CrocoDash.rm6.tests.conftest) GIVEN_ANGLE (CrocoDash.rm6.regional_mom6.rotation.RotationMethod attribute), [1] GLORYS (class in CrocoDash.raw_data_access.datasets.glorys)

H

hyperbolictan_thickness_profile() (in module CrocoDash.rm6.regional_mom6.regional_mom6)

I

init_args_check() (CrocoDash.case.Case class method) init_tracers (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property) init_velocities (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property) initial_condition_paths (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property)

initialize_grid_rotation_angle() (in module CrocoDash.rm6.regional_mom6.rotation) initialize_grid_rotation_angles_using_expanded_hgrid() (in module CrocoDash.rm6.regional_mom6.rotation) interpolate_from_file() (CrocoDash.topo.Topo method) is_rectilinear_hgrid() (in module CrocoDash.rm6.regional_mom6.utils)

L

latlon_to_cartesian() (in module CrocoDash.rm6.regional_mom6.utils) link (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS attribute) load_all_datasets() (in module CrocoDash.raw_data_access.datasets) load_config() (in module CrocoDash.extract_forcings.utils) (in module CrocoDash.raw_data_access.utils)

load_from_json() (CrocoDash.rm6.regional_mom6.config.Config static method) logger (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS attribute) longitude_slicer() (in module CrocoDash.rm6.regional_mom6.regional_mom6)

M

m6b_fill_missing_data_wrapper() (in module CrocoDash.extract_forcings.code.regrid_dataset_piecewise) main() (in module CrocoDash.extract_forcings.driver) mask_dataset() (in module CrocoDash.rm6.regional_mom6.regridding) merge_piecewise_dataset() (in module CrocoDash.extract_forcings.code.merge_piecewise_dataset) module CrocoDash CrocoDash.case CrocoDash.extract_forcings CrocoDash.extract_forcings.code CrocoDash.extract_forcings.code.get_dataset_piecewise CrocoDash.extract_forcings.code.merge_piecewise_dataset CrocoDash.extract_forcings.code.regrid_dataset_piecewise CrocoDash.extract_forcings.driver CrocoDash.extract_forcings.utils CrocoDash.grid CrocoDash.raw_data_access CrocoDash.raw_data_access.datasets CrocoDash.raw_data_access.datasets.glorys CrocoDash.raw_data_access.datasets.seawifs CrocoDash.raw_data_access.datasets.utils CrocoDash.raw_data_access.utils CrocoDash.rm6 CrocoDash.rm6.regional_mom6 CrocoDash.rm6.regional_mom6.config CrocoDash.rm6.regional_mom6.MOM_parameter_tools CrocoDash.rm6.regional_mom6.regional_mom6 CrocoDash.rm6.regional_mom6.regridding CrocoDash.rm6.regional_mom6.rotation CrocoDash.rm6.regional_mom6.utils CrocoDash.rm6.tests CrocoDash.rm6.tests.conftest CrocoDash.rm6.tests.test_config_class CrocoDash.rm6.tests.test_expt_class CrocoDash.rm6.tests.test_grid_generation CrocoDash.rm6.tests.test_parameter CrocoDash.rm6.tests.test_regridding CrocoDash.rm6.tests.test_rotation CrocoDash.rm6.tests.test_tides CrocoDash.rm6.tests.test_utils CrocoDash.topo CrocoDash.topo_editor CrocoDash.utils CrocoDash.vgrid

modulo_around_point() (in module CrocoDash.rm6.regional_mom6.rotation) mom6_angle_calculation_method() (in module CrocoDash.rm6.regional_mom6.rotation)

N

name (CrocoDash.case.Case property)

NO_ROTATION (CrocoDash.rm6.regional_mom6.rotation.RotationMethod attribute), [1] number_of_gridpoints() (in module CrocoDash.rm6.tests.conftest)

O

ocean_state_boundary_paths (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property)

P

parse_dataset_folder() (in module CrocoDash.extract_forcings.utils) process_bgc_ic() (CrocoDash.case.Case method) process_bgc_iron_forcing() (CrocoDash.case.Case method) process_chl() (CrocoDash.case.Case method) process_forcings() (CrocoDash.case.Case method)

process_initial_and_boundary_conditions() (CrocoDash.case.Case method) process_river_nutrients() (CrocoDash.case.Case method) process_tides() (CrocoDash.case.Case method) product_name (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) (CrocoDash.raw_data_access.datasets.seawifs.SeaWIFS attribute)

Q

quadrilateral_area() (in module CrocoDash.rm6.regional_mom6.utils)

quadrilateral_areas() (in module CrocoDash.rm6.regional_mom6.utils)

R

read_MOM_file_as_dict() (in module CrocoDash.rm6.regional_mom6.MOM_parameter_tools) regrid_dataset_piecewise() (in module CrocoDash.extract_forcings.code.regrid_dataset_piecewise) regrid_tides() (CrocoDash.rm6.regional_mom6.regional_mom6.segment method) regrid_velocity_tracers() (CrocoDash.rm6.regional_mom6.regional_mom6.segment method)

rotate() (in module CrocoDash.rm6.regional_mom6.utils) rotate_complex() (in module CrocoDash.rm6.regional_mom6.utils) RotationMethod (class in CrocoDash.rm6.regional_mom6.rotation) run_FRE_tools() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) runoff_in_compset (CrocoDash.case.Case property)

S

save_to_json() (CrocoDash.rm6.regional_mom6.config.Config static method) SeaWIFS (class in CrocoDash.raw_data_access.datasets.seawifs) segment (class in CrocoDash.rm6.regional_mom6.regional_mom6) setup_bathymetry() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) setup_boundary_tides() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) setup_era5() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method)

setup_initial_condition() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) setup_logger() (in module CrocoDash.raw_data_access.utils) (in module CrocoDash.rm6.regional_mom6.utils) (in module CrocoDash.utils) setup_ocean_state_boundaries() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) setup_run_directory() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) setup_single_boundary() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method)

T

test_add_or_update_time_dim() (in module CrocoDash.rm6.tests.test_regridding) test_add_secondary_dimension() (in module CrocoDash.rm6.tests.test_regridding) test_angle_between() (in module CrocoDash.rm6.tests.test_utils) test_change_MOM_parameter() (in module CrocoDash.rm6.tests.test_parameter) test_driver() (in module CrocoDash.extract_forcings.driver) test_expanded_hgrid_generation() (in module CrocoDash.rm6.tests.test_rotation) test_fill_missing_data() (in module CrocoDash.rm6.tests.test_regridding) test_generate_dz() (in module CrocoDash.rm6.tests.test_regridding) test_generate_encoding() (in module CrocoDash.rm6.tests.test_regridding) test_generate_layer_thickness() (in module CrocoDash.rm6.tests.test_regridding) test_get_boundary_mask() (in module CrocoDash.rm6.tests.test_regridding) test_get_curvilinear_hgrid_fixture() (in module CrocoDash.rm6.tests.test_rotation) test_get_edge() (in module CrocoDash.rm6.tests.test_utils) test_get_rotation_angle() (in module CrocoDash.rm6.tests.test_rotation) test_hyperbolictan_thickness_profile_equispaced() (in module CrocoDash.rm6.tests.test_grid_generation) test_hyperbolictan_thickness_profile_symmetric() (in module CrocoDash.rm6.tests.test_grid_generation) test_initialize_grid_rotation_angle() (in module CrocoDash.rm6.tests.test_rotation) test_initialize_grid_rotation_angle_using_expanded_hgrid() (in module CrocoDash.rm6.tests.test_rotation) test_latlon_to_cartesian() (in module CrocoDash.rm6.tests.test_grid_generation) test_longitude_slicer() (in module CrocoDash.rm6.tests.test_grid_generation) test_mask_dataset() (in module CrocoDash.rm6.tests.test_regridding) test_modulo_around_point() (in module CrocoDash.rm6.tests.test_rotation) test_mom6_angle_calculation_method() (in module CrocoDash.rm6.tests.test_rotation) test_mom6_angle_calculation_method_simple_square_grids() (in module CrocoDash.rm6.tests.test_rotation) test_ocean_forcing() (in module CrocoDash.rm6.tests.test_expt_class)

test_quadrilateral_area() (in module CrocoDash.rm6.tests.test_grid_generation) test_quadrilateral_area_exception() (in module CrocoDash.rm6.tests.test_grid_generation) test_quadrilateral_areas() (in module CrocoDash.rm6.tests.test_grid_generation) test_read_config() (in module CrocoDash.rm6.tests.test_config_class) test_rectangular_boundaries() (in module CrocoDash.rm6.tests.test_expt_class) test_rectangular_hgrid() (in module CrocoDash.rm6.tests.test_grid_generation) test_setup_bathymetry() (in module CrocoDash.rm6.tests.test_expt_class) test_smoke_untested_funcs() (in module CrocoDash.rm6.tests.test_regridding) test_str_dump() (in module CrocoDash.rm6.tests.test_config_class) test_tides() (in module CrocoDash.rm6.tests.test_tides) test_vecdot() (in module CrocoDash.rm6.tests.test_utils) test_vertical_coordinate_encoding() (in module CrocoDash.rm6.tests.test_regridding) test_write_config() (in module CrocoDash.rm6.tests.test_config_class) test_write_config_fail() (in module CrocoDash.rm6.tests.test_config_class) tides_boundary_paths (CrocoDash.rm6.regional_mom6.regional_mom6.experiment property) tidy_bathymetry() (CrocoDash.rm6.regional_mom6.regional_mom6.experiment method) time_units (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) time_var_name (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) Topo (class in CrocoDash.topo) tracer_lat_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) tracer_lon_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) tracer_var_names (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) tracer_x_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) tracer_y_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) try_pint_convert() (in module CrocoDash.rm6.regional_mom6.utils)

U

u_lat_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) u_lon_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute)

u_var_name (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) u_x_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) u_y_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute)

V

v_lat_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) v_lon_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) v_var_name (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute)

v_x_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) v_y_coord (CrocoDash.raw_data_access.datasets.glorys.GLORYS attribute) vecdot() (in module CrocoDash.rm6.regional_mom6.utils) vertical_coordinate_encoding() (in module CrocoDash.rm6.regional_mom6.regridding)

W

write_bash_curl_script() (in module CrocoDash.raw_data_access.datasets.utils)

write_config() (in module CrocoDash.extract_forcings.utils) write_MOM_file() (in module CrocoDash.rm6.regional_mom6.MOM_parameter_tools)